Index A | C | D | F | G | I | M | N | P | R | S | U | V | W A available_samples (genoray.PGEN attribute) (genoray.VCF attribute) C chunk() (genoray.PGEN method) (genoray.VCF method) chunk_ranges() (genoray.PGEN method) concat() (genoray.SparseVar2 class method) contig_array() (genoray.Reference method) contigs (genoray.PGEN attribute) (genoray.SparseVar attribute) (genoray.VCF attribute) cosmic_signatures() (in module genoray) current_samples (genoray.PGEN property) (genoray.VCF property) D dosage_field (genoray.VCF attribute) dosage_path (genoray.PGEN property) F fetch() (genoray.Reference method) filter (genoray.PGEN property) (genoray.VCF property) fit_signatures() (in module genoray) from_pgen() (genoray.SparseVar class method) (genoray.SparseVar2 class method) from_svar1() (genoray.SparseVar2 class method) from_vcf() (genoray.SparseVar class method) (genoray.SparseVar2 class method) from_vcf_list() (genoray.SparseVar2 class method) G geno_path (genoray.PGEN property) genoray module genoray.exprs module get_record_info() (genoray.VCF method) I ILEN (in module genoray.exprs) index (genoray.SparseVar property) is_biallelic (in module genoray.exprs) is_breakend (in module genoray.exprs) is_imprecise (in module genoray.exprs) is_indel (in module genoray.exprs) is_snp (in module genoray.exprs) is_symbolic (in module genoray.exprs) M module genoray genoray.exprs N n_samples (genoray.PGEN property) (genoray.SparseVar property) (genoray.VCF property) n_variants (genoray.SparseVar property) n_vars_in_ranges() (genoray.PGEN method) (genoray.VCF method) nbytes (genoray.PGEN property) (genoray.SparseVar property) (genoray.VCF property) P path (genoray.VCF attribute) PGEN (class in genoray) PGEN.Dosages (class in genoray) PGEN.Genos (class in genoray) PGEN.GenosDosages (class in genoray) PGEN.GenosPhasing (class in genoray) PGEN.GenosPhasingDosages (class in genoray) phasing (genoray.VCF attribute) ploidy (genoray.PGEN attribute) (genoray.VCF attribute) R read() (genoray.PGEN method) (genoray.VCF method) read_ranges() (genoray.PGEN method) (genoray.SparseVar method) read_ranges_with_length() (genoray.SparseVar method) Reference (class in genoray) S set_samples() (genoray.PGEN method) (genoray.VCF method) SparseVar (class in genoray) SparseVar2 (class in genoray) split_by_contig() (genoray.SparseVar2 method) subset_contigs() (genoray.SparseVar2 method) U using_pbar() (genoray.VCF method) V var_idxs() (genoray.PGEN method) var_ranges() (genoray.SparseVar method) VCF (class in genoray) VCF.Dosages (class in genoray) VCF.Genos16 (class in genoray) VCF.Genos16Dosages (class in genoray) VCF.Genos8 (class in genoray) VCF.Genos8Dosages (class in genoray) W with_fields() (genoray.SparseVar method) (genoray.SparseVar2 method) write_view() (genoray.SparseVar method) (genoray.SparseVar2 method)