Index A | C | D | F | G | I | M | N | P | R | S | U | V | W A annotate_with_gtf() (genoray.SparseVar method) available_samples (genoray.PGEN attribute) (genoray.VCF attribute) C cache_afs() (genoray.SparseVar method) chunk() (genoray.PGEN method) (genoray.VCF method) chunk_ranges() (genoray.PGEN method) contigs (genoray.PGEN attribute) (genoray.SparseVar attribute) (genoray.VCF attribute) current_samples (genoray.PGEN property) (genoray.VCF property) D dosage_field (genoray.VCF attribute) dosage_path (genoray.PGEN property) F filter (genoray.PGEN property) (genoray.VCF property) from_pgen() (genoray.SparseVar class method) from_vcf() (genoray.SparseVar class method) G geno_path (genoray.PGEN property) genoray module genoray.exprs module get_record_info() (genoray.VCF method) I ILEN (in module genoray.exprs) index (genoray.SparseVar attribute) is_biallelic (in module genoray.exprs) is_breakend (in module genoray.exprs) is_imprecise (in module genoray.exprs) is_indel (in module genoray.exprs) is_snp (in module genoray.exprs) is_symbolic (in module genoray.exprs) M module genoray genoray.exprs N n_samples (genoray.PGEN property) (genoray.SparseVar property) (genoray.VCF property) n_variants (genoray.SparseVar property) n_vars_in_ranges() (genoray.PGEN method) (genoray.VCF method) nbytes (genoray.PGEN property) (genoray.SparseVar property) (genoray.VCF property) P path (genoray.VCF attribute) PGEN (class in genoray) PGEN.Dosages (class in genoray) PGEN.Genos (class in genoray) PGEN.GenosDosages (class in genoray) PGEN.GenosPhasing (class in genoray) PGEN.GenosPhasingDosages (class in genoray) phasing (genoray.VCF attribute) ploidy (genoray.PGEN attribute) (genoray.VCF attribute) R read() (genoray.PGEN method) (genoray.VCF method) read_ranges() (genoray.PGEN method) (genoray.SparseVar method) read_ranges_with_length() (genoray.SparseVar method) S set_samples() (genoray.PGEN method) (genoray.VCF method) SparseVar (class in genoray) symbolic_ilen() (in module genoray.exprs) U using_pbar() (genoray.VCF method) V var_idxs() (genoray.PGEN method) var_ranges() (genoray.SparseVar method) VCF (class in genoray) VCF.Dosages (class in genoray) VCF.Genos16 (class in genoray) VCF.Genos16Dosages (class in genoray) VCF.Genos8 (class in genoray) VCF.Genos8Dosages (class in genoray) W with_fields() (genoray.SparseVar method) write_view() (genoray.SparseVar method)